PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094643.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 407aa    MW: 46598 Da    PI: 8.4683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094643.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017159182123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+C+ Cg+ ++++ +Lk+H +  H
  XP_010094643.1 159 YVCSVCGRKCKTNLDLKKHFKQlH 182
                     9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.8E-879159IPR029060PIN domain-like
SMARTSM003550.0042159182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011159187IPR007087Zinc finger, C2H2
PROSITE patternPS000280161182IPR007087Zinc finger, C2H2
CDDcd061673.71E-11173313No hitNo description
Gene3DG3DSA:3.40.50.10101.8E-8244311IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MNPICNAATT ATLQPLIPPP LLRRTNQLQS SHSHFLHTTL SLSFPLKRHI ITLRCRVRAS  60
ASGSEIDMVK NKEGVYAPKQ KKVVILWDLD NKPPRGPPYQ AAMSLKRVAE KFGHVVDASA  120
YANRHAFVHL PQWVLDQRRQ RKTLDILERK GVAVPSMPYV CSVCGRKCKT NLDLKKHFKQ  180
LHERERQKKL NRLKSLKGKK RQRFKERHIS GNHKYNEAAR DLLTPKVGYG LASELRRAGV  240
FVKTVEDKPQ AADWALKRQM QHSMSRGIDW LFLVSDDSDF SEMLRRARNA NLGTVVVGDW  300
DKALGRHADV WVPWIEVENG KITESDLVPK RRSGSDEMFG DDGFDDVGDL DRVVDELVVT  360
SDRLNGVRIS AFSEGEEEEW EAEEMGEEEY LFGDSDDEEM EVEDWIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094643.10.0hypothetical protein L484_008875
TrEMBLW9R4W90.0W9R4W9_9R
STRINGPOPTR_0014s02520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-160C2H2-like zinc finger protein